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Comparaison entre une séquence protéique et une banque
protéique : Sequence personnelle : D (Query) Banque : NRprot (SP+SPtr+Rem+GenPept+pir+nrl3d+pdb) |
FASTA searches a protein or DNA sequence data bank
version 3.3t08d2 Mar. 3, 2001
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
/tmp/tmpweb/analseq/FASTAP27375/fasta.data: 161 aa
>D
vs /db/NR/NRprot/nrprot library
searching /db/NR/NRprot/nrprot library
224285775 residues in 729489 sequences
statistics extrapolated from 60000 to 729271 sequences
Expectation_n fit: rho(ln(x))= 6.3794+/-0.000172; mu= -3.3533+/- 0.010
mean_var=82.8825+/-16.704, 0's: 171 Z-trim: 1 B-trim: 4082 in 1/63
Lambda= 0.1409
FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, gap-pen: -12/ -2, width: 16
Scan time: 263.910
The best scores are: opt bits E(729271)
sptr|Q9SE97|Q9SE97 FORMIN-LIKE PROTEIN AHF1. (1051) 930 199 1.7e-49
sptr|Q9SDN5|Q9SDN5 FH PROTEIN NFH2. ( 835) 512 114 5.1e-24
sptr|Q9SDN6|Q9SDN6 FH PROTEIN NFH1. ( 868) 500 111 2.9e-23
sptr|Q9FJX6|Q9FJX6 FORMIN-LIKE PROTEIN. ( 899) 381 87 5.6e-16
sptr|O65083|O65083 HYPOTHETICAL 13.3 KDA PROTEIN ( 117) 349 80 8.2e-15
sptr|O22824|O22824 F18O19.9 PROTEIN. ( 894) 344 80 1e-13
sptr|Q9LK78|Q9LK78 GB|AAF02158.1. ( 780) 260 63 1.3e-08
sptr|Q9SRR2|Q9SRR2 F21O3.25 PROTEIN. ( 841) 230 57 9.2e-07
sptr|O23373|O23373 HYPOTHETICAL PROTEIN. ( 130) 208 52 3.8e-06
sptr|O48682|O48682 F3I6.8 PROTEIN. ( 820) 217 54 5.6e-06
>>sptr|Q9SE97|Q9SE97 FORMIN-LIKE PROTEIN AHF1. (1051 aa)
initn: 915 init1: 915 opt: 930 Z-score: 1026.5 bits: 198.9 E(): 1.7e-49
Smith-Waterman score: 930; 97.386% identity (97.386% ungapped) in 153 aa overlap (9-161:899-1051)
10 20 30
D AATSPSFPQXIAKINEAIQVQSTITEESNSQRXXESMK
: :::::::::::::::::::::: ::::
sptr|Q VSSLCSELSNVKKAAAMDSEVLSSYVSKLSQGIAKINEAIQVQSTITEESNSQRFSESMK
870 880 890 900 910 920
40 50 60 70 80 90
D XFLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVC
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
sptr|Q TFLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVC
930 940 950 960 970 980
100 110 120 130 140 150
D KEVGMINERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
sptr|Q KEVGMINERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNSIS
990 1000 1010 1020 1030 1040
160
D LVS
:::
sptr|Q LVS
1050
>>sptr|Q9SDN5|Q9SDN5 FH PROTEIN NFH2. (835 aa)
initn: 501 init1: 501 opt: 512 Z-score: 568.9 bits: 113.9 E(): 5.1e-24
Smith-Waterman score: 512; 58.394% identity (58.824% ungapped) in 137 aa overlap (11-146:698-834)
10 20 30
D AATSPSFPQXIAKINEAIQ-VQSTITEESNSQRXXESMKX
: .: :... .... :::. .: :::.
sptr|Q NISSELINVKKSAAMDSEVLHNDVLKLSKGIQNIAEVVRSIEAVGLEESSIKRFSESMNR
670 680 690 700 710 720
40 50 60 70 80 90
D FLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCK
:.: :::.:.:.::::..:.::::::::: ::.::.:::::::::.::.::: ..: :::
sptr|Q FMKVAEEKILRLQAQETLAMSLVKEITEYVHGDSAREEAHPFRIFMVVKDFLMILDCVCK
730 740 750 760 770 780
100 110 120 130 140 150
D EVGMINERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNSISL
::: :::::.::::.:::::::: . . :. ..: :::. ::.
sptr|Q EVGTINERTIVSSAQKFPVPVNPNLQPVISGFRAKRLHSSSDEESSSP
790 800 810 820 830
160
D VS
>>sptr|Q9SDN6|Q9SDN6 FH PROTEIN NFH1. (868 aa)
initn: 489 init1: 489 opt: 500 Z-score: 555.5 bits: 111.5 E(): 2.9e-23
Smith-Waterman score: 500; 72.897% identity (72.897% ungapped) in 107 aa overlap (40-146:761-867)
10 20 30 40 50 60
D XIAKINEAIQVQSTITEESNSQRXXESMKXFLKRAEEEIIRVQAQESVALSLVKEITEYF
::. . .::::.:: ::::.::::::::::
sptr|Q VGTNRGDAHAFKVDTLLKLADVKGADGKTSFLHFVVQEIIRLQAVESVAMSLVKEITEYF
740 750 760 770 780 790
70 80 90 100 110 120
D HGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERTMVSSAHKFPVPVNPMMPQPLP
:::::.:::::::::.:::::: :.::::::::::::::.::::::::::::: . .
sptr|Q HGNSAREEAHPFRIFMVVRDFLMVLDRVCKEVGMINERTIVSSAHKFPVPVNPTLQPAIG
800 810 820 830 840 850
130 140 150 160
D GLVGRRQSSSSSSSSSTSSSDEDEHNSISLVS
::.. :: : :...::.
sptr|Q GLTAIRQHSFSDDDSSSP
860
>>sptr|Q9FJX6|Q9FJX6 FORMIN-LIKE PROTEIN. (899 aa)
initn: 351 init1: 325 opt: 381 Z-score: 424.5 bits: 87.3 E(): 5.6e-16
Smith-Waterman score: 381; 49.254% identity (50.769% ungapped) in 134 aa overlap (19-149:766-898)
10 20 30 40
D AATSPSFPQXIAKINEAIQVQSTITEESNSQRXXESMKXFLKRAEEEI
...: . :... : .:::.:::.:::::
sptr|Q SRDLVNVKKSAGMDFDVLSSYVTKLEMGLDKLRSFLKTETTQGRFFDSMKTFLKEAEEEI
740 750 760 770 780 790
50 60 70 80 90 100
D IRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINE--
.... : :::.:::.:::::::.:.:::::.:::.::::::::.: ::::: ..:
sptr|Q RKIKGGERKALSMVKEVTEYFHGNAAREEAHPLRIFMVVRDFLGVLDNVCKEVKTMQEMS
800 810 820 830 840 850
110 120 130 140 150 160
D RTMVS-SAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNSISLVS
.: : ::..: . .. .: : .:....::.: :..::
sptr|Q TSMGSASARSFRISATASLPV-LHRYKARQDDTSSDSEHSSNSST
860 870 880 890
>>sptr|O65083|O65083 HYPOTHETICAL 13.3 KDA PROTEIN (FRAG (117 aa)
initn: 308 init1: 308 opt: 349 Z-score: 403.7 bits: 80.5 E(): 8.2e-15
Smith-Waterman score: 349; 50.000% identity (50.909% ungapped) in 112 aa overlap (35-145:6-116)
10 20 30 40 50 60
D PSFPQXIAKINEAIQVQSTITEESNSQRXXESMKXFLKRAEEEIIRVQAQESVALSLVKE
.::. ::..:::.: :.:..:. :.:::.:
sptr|O QGNFFKSMSSFLQEAEEDIARIQSEENRAFSLVRE
10 20 30
70 80 90 100 110 120
D ITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERTMVSSAHKFPVPVNPMM
::::::..::::..:.:.:.::.:::::.:.::.:.: : :..:. . : : .
sptr|O TTEYFHGDAAKEEGRPLRFFVVVKDFLGVLDQVCREIGKTRTR-MAQSSPRPPQVVAHAI
40 50 60 70 80 90
130 140 150 160
D PQPL-PGLVGRRQSSSSSSSSSTSSSDEDEHNSISLVS
.:: : . :: .::.. :::
sptr|O SMPLFPKALQRRPDSSDDESSSP
100 110
>>sptr|O22824|O22824 F18O19.9 PROTEIN. (894 aa)
initn: 250 init1: 166 opt: 344 Z-score: 383.9 bits: 79.8 E(): 1e-13
Smith-Waterman score: 344; 42.958% identity (46.565% ungapped) in 142 aa overlap (11-152:761-891)
10 20 30 40
D AATSPSFPQXIAKINEAIQVQSTITEESNSQRXXESMKXF
:::..:.: . . .:.. .: :::. :
sptr|O GLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVI---TELKQETGVERFLESMNSF
740 750 760 770 780
50 60 70 80 90 100
D LKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKE
:...:.:: ..:.. . ....:::.:::::::: :.:::::: :::::: ..:.::::
sptr|O LNKGEKEITELQSHGDNVMKMVKEVTEYFHGNS---ETHPFRIFAVVRDFLTILDQVCKE
790 800 810 820 830 840
110 120 130 140 150 160
D VGMINERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNSISLV
:: .::::. .: . : : .: .. ...: : : : .:.:
sptr|O VGRVNERTVYGSM-PLHSPSNQTATPLFPVVI----NNNSRLSPSGSLDDDDGSF
850 860 870 880 890
D S
>>sptr|Q9LK78|Q9LK78 GB|AAF02158.1. (780 aa)
initn: 202 init1: 111 opt: 260 Z-score: 292.6 bits: 62.7 E(): 1.3e-08
Smith-Waterman score: 260; 46.667% identity (50.000% ungapped) in 90 aa overlap (18-102:691-779)
10 20 30 40
D AATSPSFPQXIAKINEAIQVQSTITEESNSQ-----RXXESMKXFLK
:.. ..:::.: . : : :::
sptr|Q TELSNVKKSADIEYGVLRSNVSRICQGLKNIEALLLLSEESGSYGDQWLKFKERMTRFLK
670 680 690 700 710 720
50 60 70 80 90 100
D RAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVG
: :::.... .:: .:: ..:.:: :::...:: .: .:::..:::::.:.:.::::.:
sptr|Q TAAEEIVKIKIRESSTLSALEEVTEQFHGDASKE-GHTMRIFMIVRDFLSVLDQVCKEMG
730 740 750 760 770
110 120 130 140 150 160
D MINERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNSISLVS
sptr|Q D
780
>>sptr|Q9SRR2|Q9SRR2 F21O3.25 PROTEIN. (841 aa)
initn: 216 init1: 216 opt: 230 Z-score: 259.1 bits: 56.6 E(): 9.2e-07
Smith-Waterman score: 230; 38.947% identity (39.785% ungapped) in 95 aa overlap (9-101:740-834)
10 20 30
D AATSPSFPQXIAKINEAIQV--QSTITEESNSQRXXES
. . ::.:.... .. .:: . . ::
sptr|Q VRNLSSVLNDAKKSAELDYGVVRMNVSKLYEEVQKISEVLRLCEETGHSEEHQWWKFRES
710 720 730 740 750 760
40 50 60 70 80 90
D MKXFLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDR
. ::. : ::: ... .:. .: ::.:::::: . :::::. ...:..::::: ...
sptr|Q VTRFLETAAEEIKKIEREEGSTLFAVKKITEYFHVDPAKEEAQLLKVFVIVRDFLKILEG
770 780 790 800 810 820
100 110 120 130 140 150
D VCKEVGMINERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNS
:::..
sptr|Q VCKKMEVTSSLA
830 840
>>sptr|O23373|O23373 HYPOTHETICAL PROTEIN. (130 aa)
initn: 162 init1: 85 opt: 208 Z-score: 248.0 bits: 51.8 E(): 3.8e-06
Smith-Waterman score: 208; 31.579% identity (34.711% ungapped) in 133 aa overlap (24-149:1-128)
10 20 30 40 50 60
D AATSPSFPQXIAKINEAIQVQSTITEESNSQRXXESMKXFLKRAEEEIIRVQAQESVALS
. :::. .: .. :..::. .. .. .: .
sptr|O MDEESDFER---ALAGFIERADADFKWLKEEEERIMV
10 20 30
70 80 90 100 110 120
D LVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERTMVSSAHKFPVPV
::: ..::::.:::.:. .:.: .::::: ....::.:: .. : :. .. . .
sptr|O LVKSSADYFHGKSAKNEG--LRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTT
40 50 60 70 80 90
130 140 150 160
D -NPMMPQP------LPGLVGRRQSSSSSSSSSTSSSDEDEHNSISLVS
. .:.: .:... ::..::..:.. .::
sptr|O SDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS
100 110 120 130
>>sptr|O48682|O48682 F3I6.8 PROTEIN. (820 aa)
initn: 121 init1: 75 opt: 217 Z-score: 245.0 bits: 53.9 E(): 5.6e-06
Smith-Waterman score: 217; 31.111% identity (32.558% ungapped) in 135 aa overlap (12-145:545-674)
10 20 30 40
D AATSPSFPQXIAKINEAIQVQSTITEESNSQRXXESMKXFL
:: . . .:: ..... : ..:. ::
sptr|O GLSSEFTNVKKAAAVDYDTVAATCLALTSRAKDARRVLAQSE-GDNKEGVRFVKKMNEFL
520 530 540 550 560 570
50 60 70 80 90 100
D KRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEV
.:::. .. .:. .: :::. :::......: . .:...:..:::::..::.:: :.
sptr|O DSVEEEVKLAKEEEKKVLELVKRTTEYYQAGAVKGK-NPLHLFVIVRDFLAMVDKVCVEI
580 590 600 610 620 630
110 120 130 140 150 160
D GM-INERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTSSSDEDEHNSISLV
. ...:. ..:... . :..: :.... :. :.:..:.:
sptr|O ARNLQRRSSMGSTQQRNAVKFPVLP---PNFMSDRSRSDSGGSDSDIWSSVLQLHLLVQG
640 650 660 670 680
D S
sptr|O LTRWNGLIFLLYFSLRPHFLVFTYSKTKLVDDTNHVGININSLISEIWALVTSKMMLLSK
690 700 710 720 730 740
161 residues in 1 query sequences
224285775 residues in 729489 library sequences
Tcomplib (4 proc)[33t08]
start: Mon Jul 16 10:09:47 2001 done: Mon Jul 16 10:11:17 2001
Scan time: 263.910 Display time: 0.200
Function used was FASTA [version 3.3t08d2 Mar. 3, 2001]