Your comments and suggestions are requested:
Send a Message to TAIR
BLASTN 2.0.8 [Jan-05-1999]
BLASTN 5.1.0.14 (beta) [Oct-04-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= C_gene
(4350 letters)
Database: AtEST
115,181 sequences; 48,576,789 total letters
[SCORES]
Score E
Sequences producing significant alignments: (bits) Value
AV548463|AV548463|Arabidopsis thaliana cDNA clon... 1189 0.0
AV544190|AV544190|Arabidopsis thaliana cDNA clon... 1166 0.0
AV546860|AV546860|Arabidopsis thaliana cDNA clon... 844 0.0
AV552669|AV552669|Arabidopsis thaliana cDNA clon... 743 0.0
AV528187|AV528187|Arabidopsis thaliana cDNA clon... 728 0.0
AV567287|AV567287|Arabidopsis thaliana cDNA clon... 636 0.0
AV522684|AV522684|Arabidopsis thaliana cDNA clon... 567 e-160
R30345|R30345|12950 Lambda-PRL2 Arabidopsis thali... 494 e-138
AV546377|AV546377|Arabidopsis thaliana cDNA clon... 472 e-131
Z18512|ATTS0888|A. thaliana transcribed sequence;... 371 e-101
Z17974|ATTS0458|A. thaliana transcribed sequence;... 299 1e-079
AV548987|AV548987|Arabidopsis thaliana cDNA clon... 50 2e-004
AV557508|AV557508|Arabidopsis thaliana cDNA clon... 46 0.003
T88504|T88504|12200 Lambda-PRL2 Arabidopsis thali... 46 0.003
Z26774|ATTS1656|A. thaliana transcribed sequence;... 46 0.003
AV556027|AV556027|Arabidopsis thaliana cDNA clon... 46 0.003
AI998303|AI998303|701545161 A. thaliana, Columbi... 46 0.003
AV442255|AV442255|Arabidopsis thaliana cDNA clon... 46 0.003
Z37667|ATTS4132|A. thaliana transcribed sequence;... 44 0.011
AV556567|AV556567|Arabidopsis thaliana cDNA clon... 44 0.011
AV561412|AV561412|Arabidopsis thaliana cDNA clon... 44 0.011
AV558227|AV558227|Arabidopsis thaliana cDNA clon... 44 0.011
BE038468|BE038468|AA17H10 AA Arabidopsis thalian... 44 0.011
AV538390|AV538390|Arabidopsis thaliana cDNA clon... 44 0.011
F19968|ATTS6007|A. thaliana transcribed sequence;... 44 0.011
N65101|N65101|20141 Lambda-PRL2 Arabidopsis thali... 44 0.011
H37592|H37592|15721 Lambda-PRL2 Arabidopsis thali... 42 0.042
T04501|T04501|548 Lambda-PRL2 Arabidopsis thalian... 42 0.042
AV549506|AV549506|Arabidopsis thaliana cDNA clon... 42 0.042
R89994|R89994|16349 Lambda-PRL2 Arabidopsis thali... 42 0.042
AV553753|AV553753|Arabidopsis thaliana cDNA clon... 40 0.17
W43404|W43404|22797 CD4-15 Arabidopsis thaliana c... 40 0.17
AV529108|AV529108|Arabidopsis thaliana cDNA clon... 40 0.17
AV541787|AV541787|Arabidopsis thaliana cDNA clon... 40 0.17
H36514|H36514|14182 Lambda-PRL2 Arabidopsis thali... 40 0.17
AV544919|AV544919|Arabidopsis thaliana cDNA clon... 40 0.17
AV546139|AV546139|Arabidopsis thaliana cDNA clon... 40 0.17
T42132|T42132|5395 Lambda-PRL2 Arabidopsis thalia... 40 0.17
F14051|ATTS4973|A. thaliana transcribed sequence;... 40 0.17
AV553467|AV553467|Arabidopsis thaliana cDNA clon... 40 0.17
AV548021|AV548021|Arabidopsis thaliana cDNA clon... 40 0.17
AI993258|AI993258|701495863 A. thaliana, Ohio St... 40 0.17
AV528695|AV528695|Arabidopsis thaliana cDNA clon... 40 0.17
AI239378|AI239378|EST025 Arabidopsis pSMASH Libr... 40 0.17
T45893|T45893|9156 Lambda-PRL2 Arabidopsis thalia... 38 0.66
T22899|T22899|4907 Lambda-PRL2 Arabidopsis thalia... 38 0.66
AV550848|AV550848|Arabidopsis thaliana cDNA clon... 38 0.66
AA395909|AA395909|25897 Lambda-PRL2 Arabidopsis ... 38 0.66
AV543440|AV543440|Arabidopsis thaliana cDNA clon... 38 0.66
N38646|N38646|19873 Lambda-PRL2 Arabidopsis thali... 38 0.66
AA395163|AA395163|26960 Lambda-PRL2 Arabidopsis ... 36 2.6
AA394661|AA394661|26528 Lambda-PRL2 Arabidopsis ... 36 2.6
AV537297|AV537297|Arabidopsis thaliana cDNA clon... 36 2.6
AV545651|AV545651|Arabidopsis thaliana cDNA clon... 36 2.6
Z17908|ATTS0392|A. thaliana transcribed sequence;... 36 2.6
Z33946|ATTS3004|A. thaliana transcribed sequence;... 36 2.6
BE037649|BE037649|AA02C12 AA Arabidopsis thalian... 36 2.6
AV549062|AV549062|Arabidopsis thaliana cDNA clon... 36 2.6
AV567629|AV567629|Arabidopsis thaliana cDNA clon... 36 2.6
H36739|H36739|14407 Lambda-PRL2 Arabidopsis thali... 36 2.6
AV524016|AV524016|Arabidopsis thaliana cDNA clon... 36 2.6
AV546999|AV546999|Arabidopsis thaliana cDNA clon... 36 2.6
AV529053|AV529053|Arabidopsis thaliana cDNA clon... 36 2.6
AA395490|AA395490|27273 Lambda-PRL2 Arabidopsis ... 36 2.6
AA605440|AA605440|30476 Lambda-PRL2 Arabidopsis ... 36 2.6
AV539512|AV539512|Arabidopsis thaliana cDNA clon... 36 2.6
AV528076|AV528076|Arabidopsis thaliana cDNA clon... 36 2.6
AA720269|AA720269|33462 Lambda-PRL2 Arabidopsis ... 36 2.6
AV532813|AV532813|Arabidopsis thaliana cDNA clon... 36 2.6
BE528027|BE528027|M70A10STM Arabidopsis developi... 36 2.6
N38471|N38471|19698 Lambda-PRL2 Arabidopsis thali... 36 2.6
AV546483|AV546483|Arabidopsis thaliana cDNA clon... 36 2.6
N38534|N38534|19761 Lambda-PRL2 Arabidopsis thali... 36 2.6
N37304|N37304|18531 Lambda-PRL2 Arabidopsis thali... 36 2.6
T04022|T04022|225 AT-NHC Arabidopsis thaliana cDN... 36 2.6
AA006278|AA006278|24503 Lambda-PRL2 Arabidopsis t... 36 2.6
AV545988|AV545988|Arabidopsis thaliana cDNA clon... 36 2.6
T21773|T21773|3781 Lambda-PRL2 Arabidopsis thalia... 36 2.6
[ALIGNMENTS]
________________________________________________________________________________
RANK 1 ITERATION 0
AV548463|AV548463|Arabidopsis thaliana cDNA
clone:RZL54g03F, 3' end.
Length = 600
Score = 1189 bits (600), Expect = 0.0
Identities = 600/600 (100%)
Strand = Plus / Plus
Query: 720 caaaaaactccttatcgtcgctatctccgccgtttcctccgctgctttagtcgctctact 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaaaaactccttatcgtcgctatctccgccgtttcctccgctgctttagtcgctctact 60
Query: 780 tatcgctttactctattggcgaagaagcaaacgtaaccaagatcttaacttctccgatga 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatcgctttactctattggcgaagaagcaaacgtaaccaagatcttaacttctccgatga 120
Query: 840 tagcaaaacatacaccaccgacagtagccgccgtgtctaccctcctcctccggcaacggc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagcaaaacatacaccaccgacagtagccgccgtgtctaccctcctcctccggcaacggc 180
Query: 900 gcctccaacacgacgcaatgcggaggctagaagtaaacagaggaccaccacgagctccac 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcctccaacacgacgcaatgcggaggctagaagtaaacagaggaccaccacgagctccac 240
Query: 960 caataacaacagctctgagtttctttacttaggaacaatggtgaatcaaagaggaatcga 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caataacaacagctctgagtttctttacttaggaacaatggtgaatcaaagaggaatcga 300
Query: 1020 tgaacaatctcttagtaataatggatcaagctcaagaaaacttgaatctccagatcttca 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaacaatctcttagtaataatggatcaagctcaagaaaacttgaatctccagatcttca 360
Query: 1080 accacttcctccattgatgaaacgaagtttccgtttaaatccagatgttggttcaatcgg 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accacttcctccattgatgaaacgaagtttccgtttaaatccagatgttggttcaatcgg 420
Query: 1140 agaagaagatgaagaagatgagttttactctccacgtggctcacaaagcgggcgagaacc 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agaagaagatgaagaagatgagttttactctccacgtggctcacaaagcgggcgagaacc 480
Query: 1200 gttaaaccgggtcggacttccgggtcaaaatcctagatctgttaacaatgacactatctc 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttaaaccgggtcggacttccgggtcaaaatcctagatctgttaacaatgacactatctc 540
Query: 1260 ttgctcatcttcaagctctggttcaccaggaagatcaacatttatcagtatctctccttc 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgctcatcttcaagctctggttcaccaggaagatcaacatttatcagtatctctccttc 600
________________________________________________________________________________
RANK 2 ITERATION 0
AV544190|AV544190|Arabidopsis thaliana cDNA
clone:RZ35g12F, 3' end.
Length = 668
Score = 1166 bits (588), Expect = 0.0
Identities = 588/588 (100%)
Strand = Plus / Minus
Query: 3403 gctgcgatggactcagaagtactaagcagctacgtctccaagctttctcaaggcattgcc 3462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gctgcgatggactcagaagtactaagcagctacgtctccaagctttctcaaggcattgcc 609
Query: 3463 aagatcaacgaagcaatccaagtccaatcaacaatcacagaagaaagcaacagtcagagg 3522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aagatcaacgaagcaatccaagtccaatcaacaatcacagaagaaagcaacagtcagagg 549
Query: 3523 ttttcggaatcgatgaaaacgtttctgaaaagagctgaggaagagatcatcagagtacaa 3582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttttcggaatcgatgaaaacgtttctgaaaagagctgaggaagagatcatcagagtacaa 489
Query: 3583 gctcaagagagcgtagcgttatcacttgtaaaagaaatcacagagtatttccatggaaac 3642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctcaagagagcgtagcgttatcacttgtaaaagaaatcacagagtatttccatggaaac 429
Query: 3643 tcggctaaagaagaagcgcatccgtttagaatattcttggtggttagagacttccttgga 3702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tcggctaaagaagaagcgcatccgtttagaatattcttggtggttagagacttccttgga 369
Query: 3703 gtagtagacagagtttgcaaagaagtagggatgataaacgaaagaacaatggttagttct 3762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtagtagacagagtttgcaaagaagtagggatgataaacgaaagaacaatggttagttct 309
Query: 3763 gctcataagtttcctgttccagtgaatccaatgatgccacaacctcttcctggactcgtt 3822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gctcataagtttcctgttccagtgaatccaatgatgccacaacctcttcctggactcgtt 249
Query: 3823 ggacgaagacaatcttcttcttcttcgtcgtcgtcttcaacctcttcgtctgatgaagac 3882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggacgaagacaatcttcttcttcttcgtcgtcgtcttcaacctcttcgtctgatgaagac 189
Query: 3883 gaacataactcaatctcattagtttcttaaggtgagatctcagctttgtctgtgcatgtt 3942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaacataactcaatctcattagtttcttaaggtgagatctcagctttgtctgtgcatgtt 129
Query: 3943 gttgtaaaaagtatccagtattggattgttttgtcataatagatttaa 3990
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gttgtaaaaagtatccagtattggattgttttgtcataatagatttaa 81
Score = 83.8 bits (42), Expect = 1e-014
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 4004 gagggagggaattaatgacagaaacaaagaagtgtttttctt 4045
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gagggagggaattaatgacagaaacaaagaagtgtttttctt 26
________________________________________________________________________________
RANK 3 ITERATION 0
AV546860|AV546860|Arabidopsis thaliana cDNA
clone:RZL20h01F, 3' end.
Length = 436
Score = 844 bits (426), Expect = 0.0
Identities = 426/426 (100%)
Strand = Plus / Minus
Query: 3565 gagatcatcagagtacaagctcaagagagcgtagcgttatcacttgtaaaagaaatcaca 3624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagatcatcagagtacaagctcaagagagcgtagcgttatcacttgtaaaagaaatcaca 377
Query: 3625 gagtatttccatggaaactcggctaaagaagaagcgcatccgtttagaatattcttggtg 3684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagtatttccatggaaactcggctaaagaagaagcgcatccgtttagaatattcttggtg 317
Query: 3685 gttagagacttccttggagtagtagacagagtttgcaaagaagtagggatgataaacgaa 3744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttagagacttccttggagtagtagacagagtttgcaaagaagtagggatgataaacgaa 257
Query: 3745 agaacaatggttagttctgctcataagtttcctgttccagtgaatccaatgatgccacaa 3804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agaacaatggttagttctgctcataagtttcctgttccagtgaatccaatgatgccacaa 197
Query: 3805 cctcttcctggactcgttggacgaagacaatcttcttcttcttcgtcgtcgtcttcaacc 3864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cctcttcctggactcgttggacgaagacaatcttcttcttcttcgtcgtcgtcttcaacc 137
Query: 3865 tcttcgtctgatgaagacgaacataactcaatctcattagtttcttaaggtgagatctca 3924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tcttcgtctgatgaagacgaacataactcaatctcattagtttcttaaggtgagatctca 77
Query: 3925 gctttgtctgtgcatgttgttgtaaaaagtatccagtattggattgttttgtcataatag 3984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gctttgtctgtgcatgttgttgtaaaaagtatccagtattggattgttttgtcataatag 17
Query: 3985 atttaa 3990
||||||
Sbjct: 16 atttaa 11
________________________________________________________________________________
RANK 4 ITERATION 0
AV552669|AV552669|Arabidopsis thaliana cDNA
clone:RZ35g12R, 5' end.
Length = 375
Score = 743 bits (375), Expect = 0.0
Identities = 375/375 (100%)
Strand = Plus / Plus
Query: 1131 ttcaatcggagaagaagatgaagaagatgagttttactctccacgtggctcacaaagcgg 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcaatcggagaagaagatgaagaagatgagttttactctccacgtggctcacaaagcgg 60
Query: 1191 gcgagaaccgttaaaccgggtcggacttccgggtcaaaatcctagatctgttaacaatga 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgagaaccgttaaaccgggtcggacttccgggtcaaaatcctagatctgttaacaatga 120
Query: 1251 cactatctcttgctcatcttcaagctctggttcaccaggaagatcaacatttatcagtat 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cactatctcttgctcatcttcaagctctggttcaccaggaagatcaacatttatcagtat 180
Query: 1311 ctctccttcaatgagtcctaagagatctgaaccaaaaccgccggttatctccacaccaga 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctctccttcaatgagtcctaagagatctgaaccaaaaccgccggttatctccacaccaga 240
Query: 1371 accggcggagttaaccgattatagatttgttcggtctccgtcactgtcgttagcttcttt 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 accggcggagttaaccgattatagatttgttcggtctccgtcactgtcgttagcttcttt 300
Query: 1431 atcgtcgggattgaaaaactccgatgaagtaggattgaatcaaatctttagatctccgac 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcgtcgggattgaaaaactccgatgaagtaggattgaatcaaatctttagatctccgac 360
Query: 1491 ggttacatctctaac 1505
|||||||||||||||
Sbjct: 361 ggttacatctctaac 375
________________________________________________________________________________
RANK 5 ITERATION 0
AV528187|AV528187|Arabidopsis thaliana cDNA
clone:APZL03b09R, 5' end.
Length = 382
Score = 728 bits (367), Expect = 0.0
Identities = 378/382 (98%)
Strand = Plus / Plus
Query: 972 ctctgagtttctttacttaggaacaatggtgaatcaaagaggaatcgatgaacaatctct 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgagtttctttacttaggaacaatggtgaatcaaagaggaatcgatgaacaatctct 60
Query: 1032 tagtaataatggatcaagctcaagaaaacttgaatctccagatcttcaaccacttcctcc 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagtaataatggatcaagctcaagaaaacttgaatctccagatcttcaaccacttcctcc 120
Query: 1092 attgatgaaacgaagtttccgtttaaatccagatgttggttcaatcggagaagaagatga 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgatgaaacgaagtttccgtttaaatccagatgttggttcaatcggagaagaagatga 180
Query: 1152 agaagatgagttttactctccacgtggctcacaaagcgggcgagaaccgttaaaccgggt 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaagatgagttttactctccacgtggctcacaaagcgggcgagaaccgttaaaccgggt 240
Query: 1212 cggacttccgggtcaaaatcctagatctgttaacaatgacactatctcttgctcatcttc 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cggacttccgggtcaaaatcctagatctgttaacaatgacactatctcttgctcatcttc 300
Query: 1272 aagctctggttcaccaggaagatcaacatttatcagtatctctccttcaatgagtcctaa 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagctctggttcaccaggaagatcaacatttatcagtatctctccttcaatgagtcctaa 360
Query: 1332 gagatctgaaccaaaaccgccg 1353
|||||| | |||||||||||
Sbjct: 361 gagatcntgaacaaaaccgccg 382
________________________________________________________________________________
RANK 6 ITERATION 0
AV567287|AV567287|Arabidopsis thaliana cDNA
clone:SQL10e08F, 3' end.
Length = 331
Score = 636 bits (321), Expect = 0.0
Identities = 321/321 (100%)
Strand = Plus / Minus
Query: 3670 agaatattcttggtggttagagacttccttggagtagtagacagagtttgcaaagaagta 3729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agaatattcttggtggttagagacttccttggagtagtagacagagtttgcaaagaagta 272
Query: 3730 gggatgataaacgaaagaacaatggttagttctgctcataagtttcctgttccagtgaat 3789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gggatgataaacgaaagaacaatggttagttctgctcataagtttcctgttccagtgaat 212
Query: 3790 ccaatgatgccacaacctcttcctggactcgttggacgaagacaatcttcttcttcttcg 3849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ccaatgatgccacaacctcttcctggactcgttggacgaagacaatcttcttcttcttcg 152
Query: 3850 tcgtcgtcttcaacctcttcgtctgatgaagacgaacataactcaatctcattagtttct 3909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tcgtcgtcttcaacctcttcgtctgatgaagacgaacataactcaatctcattagtttct 92
Query: 3910 taaggtgagatctcagctttgtctgtgcatgttgttgtaaaaagtatccagtattggatt 3969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 taaggtgagatctcagctttgtctgtgcatgttgttgtaaaaagtatccagtattggatt 32
Query: 3970 gttttgtcataatagatttaa 3990
|||||||||||||||||||||
Sbjct: 31 gttttgtcataatagatttaa 11
________________________________________________________________________________
RANK 7 ITERATION 0
AV522684|AV522684|Arabidopsis thaliana cDNA
clone:APZL03b09F, 3' end.
Length = 402
Score = 567 bits (286), Expect = e-160
Identities = 339/354 (95%), Gaps = 2/354 (0%)
Strand = Plus / Minus
Query: 3639 aaactcggctaaagaagaagcgcatccgtttagaatattcttggtggttagagacttcct 3698
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 402 aaactcggctaaagaagaagcgcatcagtttagaatattcttggtgcttagagacttcct 343
Query: 3699 tggagtagtagacagagtttgcaaagaagtagggatgataaacgaa-agaacaatggtta 3757
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 342 tggagtagtcgacagagtttgcaaagaagtagggatgataaacgaacagaacaatggttc 283
Query: 3758 gttctgctcataagtttcctgttccagtgaatccaatgatgccacaacctcttcctggac 3817
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 282 gttctgctcataagtttcctgttccagtgaatccactgatgccacaacctcttcatggac 223
Query: 3818 tcgttggacgaagacaatc-ttcttcttcttcgtcgtcgtcttcaacctcttcgtctgat 3876
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tcgttggacgaagacaatccttcttcttcttcgtcgtcgtcttcaacctcttcgtctgat 163
Query: 3877 gaagacgaacataactcaatctcattagtttcttaaggtgagatctcagctttgtctgtg 3936
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 162 gaagacgaacataactcaatctcattagtctcttaaggtgagatctcagccttgtctgtg 103
Query: 3937 catgttgttgtaaaaagtatccagtattggattgttttgtcataatagatttaa 3990
||| || || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 102 catcttcttctaaaacgtatccagtattggattgttctgtcataatagatttaa 49
Score = 69.9 bits (35), Expect = 2e-010
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 4004 gagggagggaattaatgacagaaacaaagaagtgt 4038
|||||||||||||||||||||||||||||||||||
Sbjct: 35 gagggagggaattaatgacagaaacaaagaagtgt 1
________________________________________________________________________________
RANK 8 ITERATION 0
R30345|R30345|12950 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 159O16T7.
Length = 463
Score = 494 bits (249), Expect = e-138
Identities = 276/282 (97%), Gaps = 3/282 (1%)
Strand = Plus / Plus
Query: 3080 aggctgcttgtgaagaactgaggaacagtaggatgttcttaaagcttcttgaagcggttc 3139
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aggctgcttgtnaagaactgaggaacagtaggatgttcttaaagcttcttgaagcggttc 134
Query: 3140 taaagacaggaaaccgtatgaacgttggaacaaaccgaggagatgcacatgcgttcaagc 3199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 taaagacaggaaaccgtatgaacgttggaacaaaccgaggagatgcacatgcgttcaagc 194
Query: 3200 ttgatacacttctcaagctagtcgatgtcaaaggcgctgatgggaaaacaactctcttgc 3259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttgatacacttctcaagctagtcgatgtcaaaggcgctgatgggaaaacaactctcttgc 254
Query: 3260 atttcgttgtacaagagataatccgagcagaaggcacacgtctct-caggtaacaataca 3318
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 255 atttcgttgtacaagagataatccgagcagaaggcacacgtctctccaggtaacaataca 314
Query: 3319 caaacagatgacattaaatgcc-ggaaacta-ggtctccaag 3358
||| ||| |||||||||||||| |||||||| ||||||||||
Sbjct: 315 caancagntgacattaaatgccgggaaactagggtctccaag 356
Score = 153 bits (77), Expect = 2e-035
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 2922 agttgatgcaatgctctatgtagccaactttgagtccgaggttgaatacttgaagaaatc 2981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttgatgcaatgctctatgtagccaactttgagtccgaggttgaatacttgaagaaatc 60
Query: 2982 ttttgagactcttgagg 2998
|||||||||||||||||
Sbjct: 61 ttttgagactcttgagg 77
________________________________________________________________________________
RANK 9 ITERATION 0
AV546377|AV546377|Arabidopsis thaliana cDNA
clone:RZL12h09F, 3' end.
Length = 382
Score = 472 bits (238), Expect = e-131
Identities = 238/238 (100%)
Strand = Plus / Minus
Query: 3753 ggttagttctgctcataagtttcctgttccagtgaatccaatgatgccacaacctcttcc 3812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggttagttctgctcataagtttcctgttccagtgaatccaatgatgccacaacctcttcc 323
Query: 3813 tggactcgttggacgaagacaatcttcttcttcttcgtcgtcgtcttcaacctcttcgtc 3872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggactcgttggacgaagacaatcttcttcttcttcgtcgtcgtcttcaacctcttcgtc 263
Query: 3873 tgatgaagacgaacataactcaatctcattagtttcttaaggtgagatctcagctttgtc 3932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgatgaagacgaacataactcaatctcattagtttcttaaggtgagatctcagctttgtc 203
Query: 3933 tgtgcatgttgttgtaaaaagtatccagtattggattgttttgtcataatagatttaa 3990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtgcatgttgttgtaaaaagtatccagtattggattgttttgtcataatagatttaa 145
Score = 212 bits (107), Expect = 2e-053
Identities = 123/131 (93%)
Strand = Plus / Minus
Query: 4004 gagggagggaattaatgacagaaacaaagaagtgtttttcttttctgcatttgtgtnnnn 4063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gagggagggaattaatgacagaaacaaagaagtgtttttcttttctgcatttgtgtaaaa 72
Query: 4064 nnnntaatataggtttaccttaaaatttgttcatcttaaattaataatttaagaatcaaa 4123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aaaataatataggtttaccttaaaatttgttcatcttaaattaataatttaagaatcaaa 12
Query: 4124 taaatttgttt 4134
|||||||||||
Sbjct: 11 taaatttgttt 1
________________________________________________________________________________
RANK 10 ITERATION 0
Z18512|ATTS0888|A. thaliana transcribed sequence; clone
TAY026, 5' end.
Length = 288
Score = 371 bits (187), Expect = e-101
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 2366 attagatgaggagatgattgagacgttgtttgtggcgaagtcgttaaacaacaaaccaaa 2425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 attagatgaggagatgattgagacgttgtttgtggcgaagtcgttaaacaacaaaccaaa 161
Query: 2426 tcagagtcagacaactccaagatgtgttctcccgagcccgaaccaagagaacagagtcct 2485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcagagtcagacaactccaagatgtgttctcccgagcccgaaccaagagaacagagtcct 221
Query: 2486 ggacccgaagaaggctcagaatattgccatcttgcttcgtgcacttaatgtcactataga 2545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggacccgaagaaggctcagaatattgccatcttgcttcgtgcacttaatgtcactataga 281
Query: 2546 agaagtt 2552
|||||||
Sbjct: 282 agaagtt 288
Score = 200 bits (101), Expect = 8e-050
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 2179 gaaactccgaaaccgaagctaaaggcgttacattgggataaagttagagcaagttcggat 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaactccgaaaccgaagctaaaggcgttacattgggataaagttagagcaagttcggat 60
Query: 2239 cgtgagatggtttgggatcatcttcgatcaagctctttcaa 2279
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtgagatggtttgggatcatcttcgatcaagctctttcaa 101
________________________________________________________________________________
RANK 11 ITERATION 0
Z17974|ATTS0458|A. thaliana transcribed sequence; clone
TASF009R, 5' end.
Length = 287
Score = 299 bits (151), Expect = 1e-079
Identities = 164/167 (98%), Gaps = 1/167 (0%)
Strand = Plus / Plus
Query: 3824 gacgaagacaatcttcttcttcttcgtcgtcgtcttcaacctcttcgtctgatgaagacg 3883
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 18 gacgaagacaatcttcttcttcttcgtcgtcgtcttcaaccacttcgtctgatgaagacg 77
Query: 3884 aacataactcaatctcattagtttcttaaggtgagatctcagctttgtctgtgcatgttg 3943
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 78 aacataactcaatctcattagtttcttaaggtgagatctcagc-ttgtctgtgcatcttg 136
Query: 3944 ttgtaaaaagtatccagtattggattgttttgtcataatagatttaa 3990
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttgtaaaaagtatccagtattggattgttttgtcataatagatttaa 183
Score = 113 bits (57), Expect = 1e-023
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 4004 gagggagggaattaatgacagaaacaaagaagtgtttttcttttctgcatttgtgtnnnn 4063
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 197 gagggagggaattaatgacagaaacaaagaagtgtttttcttttctgcatttgagtaaaa 256
Query: 4064 nnnntaatataggtttaccttaaaa 4088
|||||||||||||||||||||
Sbjct: 257 aaaataatataggtttaccttaaaa 281
________________________________________________________________________________
RANK 12 ITERATION 0
AV548987|AV548987|Arabidopsis thaliana cDNA
clone:RZ01f11R, 5' end.
Length = 532
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3835 tcttcttcttcttcgtcgtcgtcttcaac 3863
||||||||||||||||||||||| |||||
Sbjct: 36 tcttcttcttcttcgtcgtcgtcctcaac 64
Score = 38.2 bits (19), Expect = 0.66
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3835 tcttcttcttcttcgtcgtcgtc 3857
|||||||||||||| ||||||||
Sbjct: 33 tcttcttcttcttcttcgtcgtc 55
________________________________________________________________________________
RANK 13 ITERATION 0
AV557508|AV557508|Arabidopsis thaliana cDNA
clone:SQ070e09F, 3' end.
Length = 276
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4266 gatttgaaccaaagttggaacataatt 4292
||||||||||||| |||||||||||||
Sbjct: 154 gatttgaaccaaacttggaacataatt 180
________________________________________________________________________________
RANK 14 ITERATION 0
T88504|T88504|12200 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 157J7T7, mRNA sequence.
Length = 408
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3834 atcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||||||| |||||
Sbjct: 192 atcttcttcttcttcgtcgtcatcttc 166
________________________________________________________________________________
RANK 15 ITERATION 0
Z26774|ATTS1656|A. thaliana transcribed sequence; clone
YAY003.
Length = 404
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3834 atcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||||||| |||||
Sbjct: 145 atcttcttcttcttcgtcgtcatcttc 171
________________________________________________________________________________
RANK 16 ITERATION 0
AV556027|AV556027|Arabidopsis thaliana cDNA
clone:SQ032h09F, 3' end.
Length = 483
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4266 gatttgaaccaaagttggaacataatt 4292
||||||||||||| |||||||||||||
Sbjct: 154 gatttgaaccaaacttggaacataatt 180
________________________________________________________________________________
RANK 17 ITERATION 0
AI998303|AI998303|701545161 A. thaliana, Columbia
rosette-2 Arabidopsis thaliana cDNA clone 701545161, mRNA
sequence.
Length = 623
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4266 gatttgaaccaaagttggaacataatt 4292
||||||||||||| |||||||||||||
Sbjct: 154 gatttgaaccaaacttggaacataatt 180
________________________________________________________________________________
RANK 18 ITERATION 0
AV442255|AV442255|Arabidopsis thaliana cDNA
clone:APZ04c05_r, 5' end.
Length = 554
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3834 atcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||||||| |||||
Sbjct: 203 atcttcttcttcttcgtcgtcatcttc 177
________________________________________________________________________________
RANK 19 ITERATION 0
Z37667|ATTS4132|A. thaliana transcribed sequence; clone
VBVJD10.
Length = 296
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 ctcttcttcttattcttcttctactt 434
||||||||||| ||||||||||||||
Sbjct: 87 ctcttcttcttcttcttcttctactt 112
________________________________________________________________________________
RANK 20 ITERATION 0
AV556567|AV556567|Arabidopsis thaliana cDNA
clone:SQ046f03F, 3' end.
Length = 389
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3838 tcttcttcttcgtcgtcgtcttcaacctct 3867
||||||||||| ||||| ||||||||||||
Sbjct: 297 tcttcttcttcttcgtcttcttcaacctct 268
________________________________________________________________________________
RANK 21 ITERATION 0
AV561412|AV561412|Arabidopsis thaliana cDNA
clone:SQ151a06F, 3' end.
Length = 176
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3835 tcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||| ||||||||
Sbjct: 167 tcttcttcttcttcgtcttcgtcttc 142
________________________________________________________________________________
RANK 22 ITERATION 0
AV558227|AV558227|Arabidopsis thaliana cDNA
clone:SQ092f06F, 3' end.
Length = 328
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3838 tcttcttcttcgtcgtcgtcttcaacctct 3867
||||||||||| ||||| ||||||||||||
Sbjct: 297 tcttcttcttcttcgtcttcttcaacctct 268
________________________________________________________________________________
RANK 23 ITERATION 0
BE038468|BE038468|AA17H10 AA Arabidopsis thaliana cDNA
5', mRNA sequence.
Length = 706
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1135 atcggagaagaagatgaagaag 1156
||||||||||||||||||||||
Sbjct: 89 atcggagaagaagatgaagaag 68
________________________________________________________________________________
RANK 24 ITERATION 0
AV538390|AV538390|Arabidopsis thaliana cDNA
clone:RZ115e05F, 3' end.
Length = 627
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 ctcttcttcttattcttcttctactt 434
||||||||||| ||||||||||||||
Sbjct: 139 ctcttcttcttcttcttcttctactt 164
________________________________________________________________________________
RANK 25 ITERATION 0
F19968|ATTS6007|A. thaliana transcribed sequence; clone
TAP0345; 3' end.
Length = 306
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3838 tcttcttcttcgtcgtcgtcttcaacctct 3867
||||||||||| ||||| ||||||||||||
Sbjct: 302 tcttcttcttcttcgtcttcttcaacctct 273
________________________________________________________________________________
RANK 26 ITERATION 0
N65101|N65101|20141 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 227G24T7.
Length = 509
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3835 tcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||| ||||||||
Sbjct: 62 tcttcttcttcttcgtcttcgtcttc 87
________________________________________________________________________________
RANK 27 ITERATION 0
H37592|H37592|15721 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 183P16T7.
Length = 485
Score = 42.1 bits (21), Expect = 0.042
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3832 caatcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||| || ||||||||
Sbjct: 26 caatcttcttcttcttcttcttcgtcttc 54
________________________________________________________________________________
RANK 28 ITERATION 0
T04501|T04501|548 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 36F9T7.
Length = 400
Score = 42.1 bits (21), Expect = 0.042
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3832 caatcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||| || ||||||||
Sbjct: 148 caatcttcttcttcttcttcttcgtcttc 176
________________________________________________________________________________
RANK 29 ITERATION 0
AV549506|AV549506|Arabidopsis thaliana cDNA
clone:RZ08f03R, 5' end.
Length = 335
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1789 ccgtcgtcgtcttcttcttct 1809
|||||||||||||||||||||
Sbjct: 87 ccgtcgtcgtcttcttcttct 107
________________________________________________________________________________
RANK 30 ITERATION 0
R89994|R89994|16349 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 187H11T7.
Length = 562
Score = 42.1 bits (21), Expect = 0.042
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3832 caatcttcttcttcttcgtcgtcgtcttc 3860
||||||||||||||||| || ||||||||
Sbjct: 47 caatcttcttcttcttcttcttcgtcttc 75
________________________________________________________________________________
RANK 31 ITERATION 0
AV553753|AV553753|Arabidopsis thaliana cDNA
clone:RZ71e12R, 5' end.
Length = 447
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1135 atcggagaagaagatgaagaagat 1158
|||||||||||||| |||||||||
Sbjct: 58 atcggagaagaagaagaagaagat 35
________________________________________________________________________________
RANK 32 ITERATION 0
W43404|W43404|22797 CD4-15 Arabidopsis thaliana cDNA
clone G11E5T7.
Length = 525
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1138 ggagaagaagatgaagaaga 1157
||||||||||||||||||||
Sbjct: 60 ggagaagaagatgaagaaga 79
________________________________________________________________________________
RANK 33 ITERATION 0
AV529108|AV529108|Arabidopsis thaliana cDNA
clone:APZL27e09R, 5' end.
Length = 548
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3838 tcttcttcttcgtcgtcgtc 3857
||||||||||||||||||||
Sbjct: 16 tcttcttcttcgtcgtcgtc 35
________________________________________________________________________________
RANK 34 ITERATION 0
AV541787|AV541787|Arabidopsis thaliana cDNA
clone:RZ171c12F, 3' end.
Length = 580
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 407 tgctcttcttcttattcttcttct 430
||||||||||||||| ||||||||
Sbjct: 169 tgctcttcttcttatgcttcttct 146
________________________________________________________________________________
RANK 35 ITERATION 0
H36514|H36514|14182 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 174D23T7.
Length = 231
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1138 ggagaagaagatgaagaaga 1157
||||||||||||||||||||
Sbjct: 9 ggagaagaagatgaagaaga 28
________________________________________________________________________________
RANK 36 ITERATION 0
AV544919|AV544919|Arabidopsis thaliana cDNA
clone:RZ63d01F, 3' end.
Length = 632
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1138 ggagaagaagatgaagaaga 1157
||||||||||||||||||||
Sbjct: 448 ggagaagaagatgaagaaga 429
________________________________________________________________________________
RANK 37 ITERATION 0
AV546139|AV546139|Arabidopsis thaliana cDNA
clone:RZL09b05F, 3' end.
Length = 517
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1138 ggagaagaagatgaagaaga 1157
||||||||||||||||||||
Sbjct: 100 ggagaagaagatgaagaaga 119
________________________________________________________________________________
RANK 38 ITERATION 0
T42132|T42132|5395 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 110K9T7.
Length = 419
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1138 ggagaagaagatgaagaaga 1157
||||||||||||||||||||
Sbjct: 124 ggagaagaagatgaagaaga 143
________________________________________________________________________________
RANK 39 ITERATION 0
F14051|ATTS4973|A. thaliana transcribed sequence; clone
VBVWD03.
Length = 300
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 411 cttcttcttattcttcttctactt 434
||||||||| ||||||||||||||
Sbjct: 199 cttcttcttcttcttcttctactt 176
________________________________________________________________________________
RANK 40 ITERATION 0
AV553467|AV553467|Arabidopsis thaliana cDNA
clone:RZ63d01R, 5' end.
Length = 546
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1138 ggagaagaagatgaagaaga 1157
||||||||||||||||||||
Sbjct: 356 ggagaagaagatgaagaaga 375
________________________________________________________________________________
RANK 41 ITERATION 0
AV548021|AV548021|Arabidopsis thaliana cDNA
clone:RZL45d12F, 3' end.
Length = 501
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1138 ggagaagaagatgaagaaga 1157
||||||||||||||||||||
Sbjct: 99 ggagaagaagatgaagaaga 118
________________________________________________________________________________
RANK 42 ITERATION 0
AI993258|AI993258|701495863 A. thaliana, Ohio State
clone set Arabidopsis thaliana cDNA clone 701495863, mRNA
sequence.
Length = 366
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1142 aagaagatgaagaagatgag 1161
||||||||||||||||||||
Sbjct: 216 aagaagatgaagaagatgag 235
________________________________________________________________________________
RANK 43 ITERATION 0
AV528695|AV528695|Arabidopsis thaliana cDNA
clone:APZL16c01R, 5' end.
Length = 601
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1789 ccgtcgtcgtcttcttcttc 1808
||||||||||||||||||||
Sbjct: 23 ccgtcgtcgtcttcttcttc 4
________________________________________________________________________________
RANK 44 ITERATION 0
AI239378|AI239378|EST025 Arabidopsis pSMASH Library
Arabidopsis thaliana cDNA 5', mRNA sequence.
Length = 239
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 408 gctcttcttcttattcttcttctacttactct 439
|||||||||||| |||||||||| ||| ||||
Sbjct: 26 gctcttcttcttcttcttcttctccttcctct 57
________________________________________________________________________________
RANK 45 ITERATION 0
T45893|T45893|9156 Lambda-PRL2 Arabidopsis thaliana
cDNA clone 133I5T7.
Length = 581
Score = 38.2 bits (19), Expect = 0.66
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 409 ctcttcttcttattcttcttct 430
|||||||||||||||| |||||
Sbjct: 203 ctcttcttcttattctncttct 224
________________________________________________________________________________
RANK 46 ITERATION 0
T22899|T22899|4907 Lambda-PRL2 Arabidopsis thaliana cDNA
clone 108A19T7.
Length = 529
Score = 38.2 bits (19), Expect = 0.66
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1140 agaagaagatgaagaagatgagt 1162
|||||||||||||||||| ||||
Sbjct: 183 agaagaagatgaagaagaagagt 205
________________________________________________________________________________
RANK 47 ITERATION 0
AV550848|AV550848|Arabidopsis thaliana cDNA
clone:RZ118c01R, 5' end.
Length = 367
Score = 38.2 bits (19), Expect = 0.66
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1984 ccgcctcctcctcctcccccacc 2006
||||||||||||||||| |||||
Sbjct: 276 ccgcctcctcctcctccaccacc 298
________________________________________________________________________________
RANK 48 ITERATION 0
AA395909|AA395909|25897 Lambda-PRL2 Arabidopsis
thaliana cDNA clone 303F8T7 3'.
Length = 444
Score = 38.2 bits (19), Expect = 0.66
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 409 ctcttcttcttattcttcttctactta 435
||||||||||| |||||||||| ||||
Sbjct: 248 ctcttcttcttcttcttcttcttctta 274
________________________________________________________________________________
RANK 49 ITERATION 0
AV543440|AV543440|Arabidopsis thaliana cDNA
clone:RZ200e04F, 3' end.
Length = 392
Score = 38.2 bits (19), Expect = 0.66
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 409 ctcttcttcttattcttcttctactta 435
||||||||||| |||||||||| ||||
Sbjct: 205 ctcttcttcttcttcttcttcttctta 179
________________________________________________________________________________
RANK 50 ITERATION 0
N38646|N38646|19873 Lambda-PRL2 Arabidopsis thaliana
cDNA clone 221D4T7 3'.
Length = 463
Score = 38.2 bits (19), Expect = 0.66
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 409 ctcttcttcttattcttcttctactta 435
||||||||||| |||||||||| ||||
Sbjct: 248 ctcttcttcttcttcttcttcttctta 274
[END ALIGNMENTS]
Database: AtEST
Posted date: Jul 14, 2001 12:16 PM
Number of letters in database: 48,576,789
Number of sequences in database: 115,181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 229131
Number of Sequences: 115181
Number of extensions: 229131
Number of successful extensions: 25282
Number of sequences better than 10.0: 339
length of query: 4350
length of database: 48576789
effective HSP length: 19
effective length of query: 4331
effective length of database: 46388350
effective search space: 200907943850
effective search space used: 200907943850
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)