BLASTN 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DNA1 (745 letters)
Database: nt 887,402 sequences; 3,459,908,534 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|2182286|gb|AC002062.1|F20P5 Sequence of BAC F20P5 from A... 1370 0.0 gi|2749918|gb|AC002396.1|AC002396 Arabidopsis thaliana chro... 168 3e-39 gi|4733952|gb|AC007258.3|AC007258 Arabidopsis thaliana chro... 46 0.033 gi|6862570|ref|NC_001140.2| Saccharomyces cerevisiae chromo... 42 0.52 gi|11181861|gb|AC007566.2|AC007566 Homo sapiens clone CTB-1... 42 0.52 gi|3947634|emb|AL034365.1|CEY69E1A Caenorhabditis elegans c... 42 0.52 gi|500825|gb|U10556.1|YSCH9205 Saccharomyces cerevisiae chr... 42 0.52 gi|6807861|emb|AL137349.1|HSM802034 Homo sapiens mRNA; cDNA... 42 0.52 gi|967212|gb|U28158.1|SCU28158 Saccharomyces cerevisiae Ifs... 42 0.52 gi|7209731|dbj|AP001297.1|AP001297 Arabidopsis thaliana gen... 42 0.52 gi|10437999|dbj|AK025475.1|AK025475 Homo sapiens cDNA: FLJ2... 42 0.52 gi|7243152|dbj|AB037807.1|AB037807 Homo sapiens mRNA for KI... 42 0.52 gi|7022269|dbj|AK001179.1|AK001179 Homo sapiens cDNA FLJ103... 42 0.52 gi|14190759|gb|AC011236.8|AC011236 Homo sapiens clone RP11-... 40 2.1 gi|12324196|gb|AC012679.5|AC012679 Arabidopsis thaliana chr... 40 2.1 gi|10956058|ref|NC_001760.1| Prevotella ruminicola plasmid ... 40 2.1 gi|4713940|gb|AC006511.5|AC006511 Homo sapiens 12p13.1 (17.... 40 2.1 gi|927285|gb|U30294.1|RAU30294 Prevotella ruminicola plasmi... 40 2.1 gi|6706274|emb|AL136329.1|MM303011 Mus musculus chromosome ... 40 2.1 gi|14329094|gb|AC022425.6|AC022425 Homo sapiens chromosome ... 38 8.1 gi|14141796|gb|AC016894.7|AC016894 Homo sapiens clone RP11-... 38 8.1 gi|12739732|gb|AC083887.15|AC083887 Mus musculus 1 BAC RP23... 38 8.1 gi|13435215|gb|AC009779.18|AC009779 Homo sapiens 12 BAC RP1... 38 8.1 gi|12656825|gb|AC015631.10|AC015631 Homo sapiens, clone RP1... 38 8.1 gi|12583782|gb|AC026794.4|AC026794 Homo sapiens chromosome ... 38 8.1 gi|6678196|ref|NM_009306.1| Mus musculus synaptotagmin 1 (S... 38 8.1 gi|10726906|gb|AE003591.2|AE003591 Drosophila melanogaster ... 38 8.1 gi|10442996|gb|AC008050.6|AC008050 Homo sapiens chromosome ... 38 8.1 gi|10442995|gb|AC007376.9|AC007376 Homo sapiens chromosome ... 38 8.1 gi|6598768|gb|AC007584.3|AC007584 Arabidopsis thaliana chro... 38 8.1 gi|3478668|gb|AC005550.1|AC005550 Homo sapiens PAC clone RP... 38 8.1 gi|4156134|gb|AC005091.1|AC005091 Homo sapiens BAC clone CT... 38 8.1 gi|6041671|gb|AF025461.2|CELM01D1 Caenorhabditis elegans co... 38 8.1 gi|2995477|gb|AC003670.1|AC003670 Homo sapiens 12q13.1 PAC ... 38 8.1 gi|3169300|gb|AC004775.1|AC004775 Homo sapiens chromosome 5... 38 8.1 gi|9650580|emb|AL359534.10|AL359534 Human DNA sequence from... 38 8.1 gi|12750835|emb|AL354992.7|AL354992 Human DNA sequence from... 38 8.1 gi|9501152|emb|AL136109.11|AL136109 Human DNA sequence from... 38 8.1 gi|10185555|emb|AL354670.4|AL354670 Human DNA sequence from... 38 8.1 gi|3217470|emb|Z81541.1|CEF48F5 Caenorhabditis elegans cosm... 38 8.1 gi|8018027|emb|AL138914.9|AL138914 Human DNA sequence from ... 38 8.1 gi|8546850|emb|AJ242742.1|IBA242742 Ipomoea batatas mRNA fo... 38 8.1 gi|1276964|gb|U47094.1|DCU47094 Daucus carota 17 kDa heat-s... 38 8.1 gi|6090544|emb|AL122032.1|SPAC513 S.pombe chromosome I cosm... 38 8.1 gi|12857756|dbj|AK018163.1|AK018163 Mus musculus adult male... 38 8.1 gi|57642|emb|X52772.1|RRP65 R.rattus p65 mRNA 38 8.1 gi|688413|dbj|D37792.1|MUSSYNA Mouse mRNA for synaptotagmin... 38 8.1 gi|2293388|emb|Y13030.1|TSTYPOL Thermococcus sp. pol gene 38 8.1
>gi|2182286|gb|AC002062.1|F20P5 Sequence of BAC F20P5 from Arabidopsis thaliana chromosome 1, complete sequence Length = 114505 Score = 1370 bits (691), Expect = 0.0 Identities = 721/729 (98%), Gaps = 2/729 (0%) Strand = Plus / Plus Query: 11 cggcaaagcttgcttaatccgaagacgtttctgtttcatcttcttaaatccgggccaacn 70 ||||||||||||| | || || |||||||||||||||||||||||||||||| |||||| Sbjct: 49003 cggcaaagcttgc-tgatgcggagacgtttctgtttcatcttcttaaatccgtgccaacc 49061 Query: 71 gcgtttacgagactaaacgcgtttctctttagggcttaattattatccagagatggctca 130 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 49062 gcgtttacgagactaaacgcgtttctctttagggc-taattattatccagagatggctca 49120 Query: 131 tcatagcaaatgtttacaaacgttggatttagcttgtaaagagctgagatctcgtggctt 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49121 tcatagcaaatgtttacaaacgttggatttagcttgtaaagagctgagatctcgtggctt 49180 Query: 191 gtttgtgaagcttttggaggcaatacttaaagctggaaacagaatgaacgcgggtaccgc 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49181 gtttgtgaagcttttggaggcaatacttaaagctggaaacagaatgaacgcgggtaccgc 49240 Query: 251 gagaggaaacgctcaagcgtttaatctaaccgcgcttttgaagctttcggatgttaaaag 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49241 gagaggaaacgctcaagcgtttaatctaaccgcgcttttgaagctttcggatgttaaaag 49300 Query: 311 cgttgatgggaagacttctttgcttaactttgtagtggaggaagttgttagatcggaagg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49301 cgttgatgggaagacttctttgcttaactttgtagtggaggaagttgttagatcggaagg 49360 Query: 371 aaaacgttgtgttatgaatagaagaagccatagcttaacacgaagcggtagtagtaacta 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49361 aaaacgttgtgttatgaatagaagaagccatagcttaacacgaagcggtagtagtaacta 49420 Query: 431 caatggtggtaatagtagtcttcaggttatgtcgaaagaagagcaagagaaagagtactt 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49421 caatggtggtaatagtagtcttcaggttatgtcgaaagaagagcaagagaaagagtactt 49480 Query: 491 gaagcttggtttaccagttgttggtggattgagctctgagttttcaaacgtgaagaaagc 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49481 gaagcttggtttaccagttgttggtggattgagctctgagttttcaaacgtgaagaaagc 49540 Query: 551 tgcttgtgtggactatgaaacggttgttgcaacttgttctgctcttgcggttagagcgaa 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49541 tgcttgtgtggactatgaaacggttgttgcaacttgttctgctcttgcggttagagcgaa 49600 Query: 611 agatgcgaaaacggtgattggagaatgtgaagatggagaaggagggaggtttgtgaaaac 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49601 agatgcgaaaacggtgattggagaatgtgaagatggagaaggagggaggtttgtgaaaac 49660 Query: 671 gatgatgacgtttcntgattcggtagaggaagaggtgaaaatagcgaaaggtgaagagag 730 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49661 gatgatgacgtttcttgattcggtagaggaagaggtgaaaatagcgaaaggtgaagagag 49720 Query: 731 gaaagtgat 739 ||||||||| Sbjct: 49721 gaaagtgat 49729
>gi|2749918|gb|AC002396.1|AC002396 Arabidopsis thaliana chromosome I BAC F3I6 genomic sequence, complete sequence Length = 122358 Score = 168 bits (85), Expect = 3e-39 Identities = 188/221 (85%), Gaps = 1/221 (0%) Strand = Plus / Plus Query: 150 acgttggatttagcttgtaaagagctgagatctcgtggcttgtttgtgaagcttttggag 209 ||||||||||| ||||||| |||||| || || ||||||||||| |||||||| ||||| Sbjct: 30384 acgttggatttggcttgtacagagcttaggtcacgtggcttgttcgtgaagctattggaa 30443 Query: 210 gcaatacttaaagctggaaacagaatgaacgcgggtaccgcgagaggaaacgctcaagcg 269 || || || ||| |||||||||||||||| || || || || ||| || | |||||||| Sbjct: 30444 gcgattctgaaatctggaaacagaatgaatgcaggaacagctaga-gagatgctcaagct 30502 Query: 270 tttaatctaaccgcgcttttgaagctttcggatgttaaaagcgttgatgggaagacttct 329 |||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| || Sbjct: 30503 tttaatctcaccgcgcttttgaaactttctgatgttaagagtgttgatgggaagacgact 30562 Query: 330 ttgcttaactttgtagtggaggaagttgttagatcggaagg 370 |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct: 30563 ttgcttaactttgttgtggaagaagtggttaggtctgaagg 30603
Score = 69.9 bits (35), Expect = 2e-09 Identities = 131/163 (80%) Strand = Plus / Plus Query: 454 aggttatgtcgaaagaagagcaagagaaagagtacttgaagcttggtttaccagttgttg 513 ||||||| ||||| ||||| |||||||||||||| | | || |||||||| ||||||| Sbjct: 30672 aggttatatcgaaggaagaacaagagaaagagtatcttagactcggtttacctgttgttg 30731 Query: 514 gtggattgagctctgagttttcaaacgtgaagaaagctgcttgtgtggactatgaaacgg 573 | || || ||||||||||| | || || ||||||||||| ||| |||||||| || | Sbjct: 30732 gagggttaagctctgagttcaccaatgttaagaaagctgcagctgtagactatgacactg 30791 Query: 574 ttgttgcaacttgttctgctcttgcggttagagcgaaagatgc 616 ||| |||||| || | |||||| || ||||||||||||||| Sbjct: 30792 ttgctgcaacgtgcttggctcttacgtctagagcgaaagatgc 30834
Score = 65.9 bits (33), Expect = 4e-08 Identities = 79/92 (85%), Gaps = 2/92 (2%) Strand = Plus / Plus Query: 647 agaaggagggaggtttgtgaaaacgatg-atgacgtttcntgattcggtagaggaagagg 705 |||||||| |||||||||||| | |||| |||| ||||| ||||||||| |||||||| | Sbjct: 30871 agaaggagtgaggtttgtgaagaagatgaatga-gtttcttgattcggttgaggaagaag 30929 Query: 706 tgaaaatagcgaaaggtgaagagaggaaagtg 737 |||| ||||||||| ||||||| ||||||| Sbjct: 30930 tgaagttagcgaaagaagaagagaagaaagtg 30961
>gi|4733952|gb|AC007258.3|AC007258 Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence, complete sequence Length = 144422 Score = 46.1 bits (23), Expect = 0.033 Identities = 41/47 (87%) Strand = Plus / Minus Query: 231 agaatgaacgcgggtaccgcgagaggaaacgctcaagcgtttaatct 277 ||||||||||| || |||||||| ||||| ||||| || |||||||| Sbjct: 120811 agaatgaacgctggaaccgcgaggggaaatgctcaggcttttaatct 120765
>gi|6862570|ref|NC_001140.2| Saccharomyces cerevisiae chromosome VIII, complete chromosome sequence Length = 562639 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 aaatgtttacaaacgttggatttag 162 |||||||| |||||||||||||||| Sbjct: 251100 aaatgtttgcaaacgttggatttag 251124
>gi|11181861|gb|AC007566.2|AC007566 Homo sapiens clone CTB-10G5, complete sequence Length = 149194 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 aaagaagagcaagagaaagag 485 ||||||||||||||||||||| Sbjct: 14921 aaagaagagcaagagaaagag 14941
>gi|3947634|emb|AL034365.1|CEY69E1A Caenorhabditis elegans cosmid Y69E1A, complete sequence Length = 37058 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 aaagaagagcaagagaaagag 485 ||||||||||||||||||||| Sbjct: 31525 aaagaagagcaagagaaagag 31505
>gi|500825|gb|U10556.1|YSCH9205 Saccharomyces cerevisiae chromosome VIII cosmid 9205 Length = 39203 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 aaatgtttacaaacgttggatttag 162 |||||||| |||||||||||||||| Sbjct: 12229 aaatgtttgcaaacgttggatttag 12253
>gi|6807861|emb|AL137349.1|HSM802034 Homo sapiens mRNA; cDNA DKFZp434A0225 (from clone DKFZp434A0225) Length = 4087 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 aaagaagagcaagagaaagag 485 ||||||||||||||||||||| Sbjct: 1856 aaagaagagcaagagaaagag 1876
>gi|967212|gb|U28158.1|SCU28158 Saccharomyces cerevisiae Ifs1p (IFS1) gene, complete cds Length = 4883 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Minus Query: 138 aaatgtttacaaacgttggatttag 162 |||||||| |||||||||||||||| Sbjct: 4562 aaatgtttgcaaacgttggatttag 4538
>gi|7209731|dbj|AP001297.1|AP001297 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13 Length = 106203 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 624 gtgattggagaatgtgaagat 644 ||||||||||||||||||||| Sbjct: 54792 gtgattggagaatgtgaagat 54812
>gi|10437999|dbj|AK025475.1|AK025475 Homo sapiens cDNA: FLJ21822 fis, clone HEP01316 Length = 3145 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 aaagaagagcaagagaaagag 485 ||||||||||||||||||||| Sbjct: 2971 aaagaagagcaagagaaagag 2991
>gi|7243152|dbj|AB037807.1|AB037807 Homo sapiens mRNA for KIAA1386 protein, partial cds Length = 4030 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 aaagaagagcaagagaaagag 485 ||||||||||||||||||||| Sbjct: 3874 aaagaagagcaagagaaagag 3894
>gi|7022269|dbj|AK001179.1|AK001179 Homo sapiens cDNA FLJ10317 fis, clone NT2RM2000452 Length = 2037 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 aaagaagagcaagagaaagag 485 ||||||||||||||||||||| Sbjct: 1881 aaagaagagcaagagaaagag 1901
>gi|14190759|gb|AC011236.8|AC011236 Homo sapiens clone RP11-312D1, complete sequence Length = 188639 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 637 gtgaagatggagaaggaggg 656 |||||||||||||||||||| Sbjct: 94597 gtgaagatggagaaggaggg 94616
>gi|12324196|gb|AC012679.5|AC012679 Arabidopsis thaliana chromosome 1 BAC F25P22 genomic sequence, complete sequence Length = 105937 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 ggtagtagtaactacaatggtggt 440 |||||||||| ||||||||||||| Sbjct: 68763 ggtagtagtagctacaatggtggt 68740
>gi|10956058|ref|NC_001760.1| Prevotella ruminicola plasmid pRAM4, complete sequence Length = 3130 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tatccagagatggctcatca 133 |||||||||||||||||||| Sbjct: 1994 tatccagagatggctcatca 2013
>gi|4713940|gb|AC006511.5|AC006511 Homo sapiens 12p13.1 (17.1-21.3 cM) BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186321 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aaagaagagcaagagaaaga 484 |||||||||||||||||||| Sbjct: 37561 aaagaagagcaagagaaaga 37580
>gi|927285|gb|U30294.1|RAU30294 Prevotella ruminicola plasmid pRAM4, complete sequence, ORF1 and ORF2 genes, complete cds Length = 3130 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tatccagagatggctcatca 133 |||||||||||||||||||| Sbjct: 1994 tatccagagatggctcatca 2013
>gi|6706274|emb|AL136329.1|MM303011 Mus musculus chromosome X, clone RP21-303O11 Length = 123835 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 gaagagcaagagaaagagta 487 |||||||||||||||||||| Sbjct: 85813 gaagagcaagagaaagagta 85832
>gi|14329094|gb|AC022425.6|AC022425 Homo sapiens chromosome 5 clone CTD-2302K4, complete sequence Length = 92872 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 465 aaagaagagcaagagaaag 483 ||||||||||||||||||| Sbjct: 54514 aaagaagagcaagagaaag 54496
>gi|14141796|gb|AC016894.7|AC016894 Homo sapiens clone RP11-17D23, complete sequence Length = 165382 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 465 aaagaagagcaagagaaagagta 487 |||||||||||| |||||||||| Sbjct: 147598 aaagaagagcaacagaaagagta 147620
>gi|12739732|gb|AC083887.15|AC083887 Mus musculus 1 BAC RP23-465C10 (Roswell Park Cancer Institute Mouse BAC) complete sequence Length = 112755 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 agatggctcatcatagcaa 139 ||||||||||||||||||| Sbjct: 111250 agatggctcatcatagcaa 111268
>gi|13435215|gb|AC009779.18|AC009779 Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192550 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 641 agatggagaaggagggagg 659 ||||||||||||||||||| Sbjct: 30999 agatggagaaggagggagg 30981
>gi|12656825|gb|AC015631.10|AC015631 Homo sapiens, clone RP11-45L5, complete sequence Length = 145138 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 179 atctcgtggcttgtttgtg 197 ||||||||||||||||||| Sbjct: 64991 atctcgtggcttgtttgtg 64973
>gi|12583782|gb|AC026794.4|AC026794 Homo sapiens chromosome 5 clone CTD-2276B5, complete sequence Length = 126905 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 219 aaagctggaaacagaatga 237 ||||||||||||||||||| Sbjct: 58199 aaagctggaaacagaatga 58181
>gi|6678196|ref|NM_009306.1| Mus musculus synaptotagmin 1 (Syt1), mRNA Length = 2381 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 464 gaaagaagagcaagagaaa 482 ||||||||||||||||||| Sbjct: 1322 gaaagaagagcaagagaaa 1340
>gi|10726906|gb|AE003591.2|AE003591 Drosophila melanogaster genomic scaffold 142000013386036 section 1 of 9, complete sequence Length = 297770 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aaagcttgcttaatccgaa 33 ||||||||||||||||||| Sbjct: 180708 aaagcttgcttaatccgaa 180726
>gi|10442996|gb|AC008050.6|AC008050 Homo sapiens chromosome 14 clone RP11-141I24 map 14q24.3, complete sequence Length = 176975 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 195 gtgaagcttttggaggcaa 213 ||||||||||||||||||| Sbjct: 175314 gtgaagcttttggaggcaa 175332
>gi|10442995|gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036, complete CDS, complete sequence Length = 186330 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 195 gtgaagcttttggaggcaa 213 ||||||||||||||||||| Sbjct: 60822 gtgaagcttttggaggcaa 60840
>gi|6598768|gb|AC007584.3|AC007584 Arabidopsis thaliana chromosome II section 101 of 255 of the complete sequence. Sequence from clones MJB20, T19E12 Length = 82189 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 574 ttgttgcaacttgttctgc 592 ||||||||||||||||||| Sbjct: 32442 ttgttgcaacttgttctgc 32460
>gi|3478668|gb|AC005550.1|AC005550 Homo sapiens PAC clone RP4-620P6 from 7p21-p22, complete sequence Length = 133237 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 629 tggagaatgtgaagatgga 647 ||||||||||||||||||| Sbjct: 31616 tggagaatgtgaagatgga 31598
>gi|4156134|gb|AC005091.1|AC005091 Homo sapiens BAC clone CTA-318C11 from 7p14-p15, complete sequence Length = 110535 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 638 tgaagatggagaaggaggg 656 ||||||||||||||||||| Sbjct: 13727 tgaagatggagaaggaggg 13745
>gi|6041671|gb|AF025461.2|CELM01D1 Caenorhabditis elegans cosmid M01D1 Length = 29977 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 633 gaatgtgaagatggagaaggagg 655 ||||| ||||||||||||||||| Sbjct: 7753 gaatgagaagatggagaaggagg 7775
>gi|2995477|gb|AC003670.1|AC003670 Homo sapiens 12q13.1 PAC RPCI1-130F5 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 88945 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 467 agaagagcaagagaaagag 485 ||||||||||||||||||| Sbjct: 62281 agaagagcaagagaaagag 62263
>gi|3169300|gb|AC004775.1|AC004775 Homo sapiens chromosome 5, P1 clone 1308e5 (LBNL H13), complete sequence Length = 81837 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 219 aaagctggaaacagaatga 237 ||||||||||||||||||| Sbjct: 11195 aaagctggaaacagaatga 11213
>gi|9650580|emb|AL359534.10|AL359534 Human DNA sequence from clone RP11-65K20 on chromosome 20 Contains parts of a novel gene similar to the gene for vacuolar ATPase isoform VA68. Contains ESTs, STSs and GSSs, complete sequence [Homo sapiens] Length = 20603 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 384 atgaatagaagaagccata 402 ||||||||||||||||||| Sbjct: 1685 atgaatagaagaagccata 1667
>gi|12750835|emb|AL354992.7|AL354992 Human DNA sequence from clone RP11-293A1 on chromosome 9, complete sequence [Homo sapiens] Length = 173911 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 644 tggagaaggagggaggtttgtga 666 ||||||||||| ||||||||||| Sbjct: 111376 tggagaaggagagaggtttgtga 111398
>gi|9501152|emb|AL136109.11|AL136109 Human DNA sequence from clone RP5-924G13 on chromosome 1. Contains the putative zinc finger protein gene KIAA1221, a 60S ribosomal protein L5 (RPL5) pseudogene, ESTs, GSSs and a CpG island, complete sequence [Homo sapiens] Length = 126367 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 666 aaaacgatgatgacgtttc 684 ||||||||||||||||||| Sbjct: 47819 aaaacgatgatgacgtttc 47837
>gi|10185555|emb|AL354670.4|AL354670 Human DNA sequence from clone RP1-206F19 on chromosome 6 Contains ESTs, STSs and GSSs, complete sequence [Homo sapiens] Length = 39348 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tggctcatcatagcaaatg 142 ||||||||||||||||||| Sbjct: 13744 tggctcatcatagcaaatg 13726
>gi|3217470|emb|Z81541.1|CEF48F5 Caenorhabditis elegans cosmid F48F5, complete sequence Length = 31668 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 695 agaggaagaggtgaaaatagcga 717 ||||||||||||||| ||||||| Sbjct: 22212 agaggaagaggtgaatatagcga 22234
>gi|8018027|emb|AL138914.9|AL138914 Human DNA sequence from clone RP11-15L1 on chromosome 13, complete sequence [Homo sapiens] Length = 153439 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 638 tgaagatggagaaggaggg 656 ||||||||||||||||||| Sbjct: 10466 tgaagatggagaaggaggg 10448
>gi|8546850|emb|AJ242742.1|IBA242742 Ipomoea batatas mRNA for peroxidase (pod gene) Length = 1279 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 137 caaatgtttacaaacgttggatt 159 |||| |||||||||||||||||| Sbjct: 567 caaaagtttacaaacgttggatt 589
>gi|1276964|gb|U47094.1|DCU47094 Daucus carota 17 kDa heat-shock cognate mRNA, somatic embryo clone Gea41, partial cds Length = 687 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 630 ggagaatgtgaagatggag 648 ||||||||||||||||||| Sbjct: 347 ggagaatgtgaagatggag 365
>gi|6090544|emb|AL122032.1|SPAC513 S.pombe chromosome I cosmid c513 Length = 13204 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 138 aaatgtttacaaacgttgg 156 ||||||||||||||||||| Sbjct: 12539 aaatgtttacaaacgttgg 12557
>gi|12857756|dbj|AK018163.1|AK018163 Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330412B06, full insert sequence Length = 1468 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 464 gaaagaagagcaagagaaa 482 ||||||||||||||||||| Sbjct: 1298 gaaagaagagcaagagaaa 1316
>gi|57642|emb|X52772.1|RRP65 R.rattus p65 mRNA Length = 4654 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 464 gaaagaagagcaagagaaa 482 ||||||||||||||||||| Sbjct: 1323 gaaagaagagcaagagaaa 1341
>gi|688413|dbj|D37792.1|MUSSYNA Mouse mRNA for synaptotagminI/65 Length = 2381 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 464 gaaagaagagcaagagaaa 482 ||||||||||||||||||| Sbjct: 1322 gaaagaagagcaagagaaa 1340
>gi|2293388|emb|Y13030.1|TSTYPOL Thermococcus sp. pol gene Length = 5640 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 204 ttggaggcaatacttaaag 222 ||||||||||||||||||| Sbjct: 5113 ttggaggcaatacttaaag 5131
Database: nt Posted date: Jun 30, 2001 10:08 PM Number of letters in database: -835,058,758 Number of sequences in database: 887,402 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1357972 Number of Sequences: 887402 Number of extensions: 1357972 Number of successful extensions: 27570 Number of sequences better than 10.0: 48 length of query: 745 length of database: 3,459,908,534 effective HSP length: 21 effective length of query: 724 effective length of database: 3,441,273,092 effective search space: 2491481718608 effective search space used: 2491481718608 T: 0 A: 30 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
